Phylogenetic Linear Regression

flowerSize | Flower size of 25 Euphorbiaceae species |

flowerTree | Phylogenetic tree of 25 Euphorbiaceae species |

guidetree | Binary population tree within Arabidopsis thaliana |

OU1d.loglik | Log likelihood of an one-dimensional Ornstein-Uhlenbeck model |

OUshifts | Detections of shifts in the OU process along a phylogeny. |

OUshifts-methods | Methods for class 'OUshifts'. |

phyloglm | Phylogenetic Generalized Linear Model |

phyloglm-methods | Methods for class 'phyloglm'. |

phylolm | Phylogenetic Linear Model |

phylolm-methods | Methods for class 'phylolm'. |

phylolm-package | Phylogenetic Linear Regression |

phylostep | Stepwise model selection for Phylogenetic Linear Model |

pruningwise.branching.times | Calculates internal node ages in an ultrametric "pruningwise"... |

pruningwise.distFromRoot | Calculates node distance from the root in an "pruningwise"... |

quartetCF | Quartet concordance factors across Arabidopsis thaliana |

rbinTrait | Binary trait simulation |

rTrait | Continuous trait simulation |

stepwise.test.tree | Fits a population tree to data from quartet concordance... |

test.one.species.tree | Tests the fit of a population tree to quartet concordance... |

test.tree.preparation | data structure preparation for testing a population tree |

three.point.compute | Computations with a (generalized) three-point structured tree |

transf.branch.lengths | Creates a tree with branch lengths to represent the 3-point... |

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