Man pages for phylolm
Phylogenetic Linear Regression
| flowerSize | Flower size of 25 Euphorbiaceae species |
| flowerTree | Phylogenetic tree of 25 Euphorbiaceae species |
| guidetree | Binary population tree within Arabidopsis thaliana |
| mace | Multi-task learning for ancestral state estimation. |
| OU1d.loglik | Log likelihood of an one-dimensional Ornstein-Uhlenbeck model |
| OUshifts | Detections of shifts in the OU process along a phylogeny. |
| OUshifts-methods | Methods for class 'OUshifts'. |
| phyloglm | Phylogenetic Generalized Linear Model |
| phyloglm-methods | Methods for class 'phyloglm'. |
| phyloglmstep | Stepwise model selection for Phylogenetic Generalized Linear... |
| phylolm | Phylogenetic Linear Model |
| phylolm-methods | Methods for class 'phylolm'. |
| phylolm-package | Phylogenetic Linear Regression |
| phylostep | Stepwise model selection for Phylogenetic Linear Model |
| pruningwise.branching.times | Calculates internal node ages in an ultrametric "pruningwise"... |
| pruningwise.distFromRoot | Calculates node distance from the root in an "pruningwise"... |
| quartetCF | Quartet concordance factors across Arabidopsis thaliana |
| rbinTrait | Binary trait simulation |
| rTrait | Continuous trait simulation |
| stepwise.test.tree | Fits a population tree to data from quartet concordance... |
| test.one.species.tree | Tests the fit of a population tree to quartet concordance... |
| test.tree.preparation | data structure preparation for testing a population tree |
| three.point.compute | Computations with a (generalized) three-point structured tree |
| transf.branch.lengths | Creates a tree with branch lengths to represent the 3-point... |
