copySubSequence.Sequence: Copy a collection of Site objects aggregated by a Sequence...
In phylosim: Flexible Simulations of Biological Sequence Evolution

Description Usage Arguments Value Author(s) See Also Examples

Copy a collection of Site objects aggregated by a Sequence object into a new Sequence object.

1 2	## S3 method for class 'Sequence' copySubSequence(this, index, process=NA, ...)

`this`	A Sequence object.
`index`	An index vector specifying a collection of sites to be copied. It is set to 1:seq$length if omitted.
`process`	The Process object performing the copy (optional).
`...`	Not used.

A new Sequence object.

Botond Sipos, Gregory Jordan

For more information see Sequence.

	# create a nucleotide sequence
	s<-NucleotideSequence(string="ATATATATATATATATA")
	# copy sites in the range 3:8 in a new object
	s2<-copySubSequence(s,3:8)
	s2
	# copy sites 1,3 and 5 from s2
	s3<-copySubSequence(s2,c(1,3,5))
	s3