detachProcess.Sequence: Detach a Process object from a set of Site objects aggregated...

In phylosim: Flexible Simulations of Biological Sequence Evolution

Description

Detach a Process object from a set of Site objects aggregated by a Sequence object.

Usage

## S3 method for class 'Sequence'
detachProcess(this, process, index, ...)

Arguments

this	A Sequence object.
process	A Process object.
index	An integer vector specifying a set of positions. It is set to 1:seq$length if omitted.
...	Not used.

Value

The Sequence object (invisible).

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see Sequence.

Examples

	# create a sequence object with two processes attached
	p<-JC69()
	s<-Sequence(length=4,alphabets=list(NucleotideAlphabet()),processes=list(list(p,K80())))
	# get the list of attached processes
	s$processes
	# detach JC69 from range c(1,4)
	detachProcess(s,p,c(1,4))
	s$processes
 

phylosim documentation built on Nov. 22, 2019, 1:07 a.m.