getBaseFreqs.GTR: Get the base frequency parameters

In phylosim: Flexible Simulations of Biological Sequence Evolution

Description

Get the base frequency parameters.

Usage

## S3 method for class 'GTR'
getBaseFreqs(this, ...)

Arguments

this	A GTR object.
...	Not used.

Value

A matrix containing the base frequencies.

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see GTR.

Examples

	# construct a GTR object
	p<-GTR()
	# set/get base frequency parameters
	setBaseFreqs(p,c(2,1,2,1)/6)
	getBaseFreqs(p)
	# set/get base frequency parameters via virtual field
	p$baseFreqs<-c(4,4,1,1)/10
	p$baseFreqs
	# get object summary
	summary(p)
 

phylosim documentation built on Nov. 22, 2019, 1:07 a.m.