setBaseFreqs.TN93: Set the base frequency parameters

In phylosim: Flexible Simulations of Biological Sequence Evolution

Description

Set the base frequency parameters.

The order of the frequency parameters must match with the order of symbols in the NucleotideAlphabet objects.

Usage

## S3 method for class 'TN93'
setBaseFreqs(this, value, ...)

Arguments

this	A TN93 object.
value	A vector of base frequencies.
...	Not used.

Value

value (invisible)

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see TN93.

Examples

	# construct a TN93 object
	p<-TN93()
	# set/get base frequency parameters
	setBaseFreqs(p,c(2,1,2,1)/6)
	getBaseFreqs(p)
	# set/get base frequency parameters via virtual field
	p$baseFreqs<-c(4,4,1,1)/10
	p$baseFreqs
	# get object summary
	summary(p)
 

phylosim documentation built on Nov. 22, 2019, 1:07 a.m.