setState.Site: Set the state of a Site object

In phylosim: Flexible Simulations of Biological Sequence Evolution

Description

Set the state of a Site object.

Usage

## S3 method for class 'Site'
setState(this, new.state, ...)

Arguments

this	A Site object.
new.state	A character vector of length one, containing a symbol belonging to the attached Alphabet object.
...	Not used.

Value

Returns the new state (invisible).

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see Site.

Examples

       # create a Site object with an Alphabet object attached
       s<-Site(alphabet=Alphabet(symbols=c(0,1)), state=1);
       # set a new state
       setState(s,"0")
       # get state via virtual field
       s$state
       # set a new state via virtual field
       s$state<-1
	s$state

 

phylosim documentation built on Nov. 22, 2019, 1:07 a.m.