setTemplateSeq.GeneralInsertor: Set the template sequence object

Description Usage Arguments Value Author(s) See Also Examples

Description

Set the template sequence object. The template sequence object is used by the default generateBy function to generate insert sequences.

Usage

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## S3 method for class 'GeneralInsertor'
setTemplateSeq(this, value, ...)

Arguments

this

A GeneralInsertor object.

value

A Sequence object.

...

Not used.

Value

The Sequence object.

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see GeneralInsertor.

Examples

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	# create a GeneralInsertor object
	i<-GeneralInsertor(
		rate=0.5,
		propose.by=function(process){sample(c(5:10),1)}, # inserts between 5 and 10
		template.seq=NucleotideSequence(string="AAAAAAA")
	)
	# get template sequence
	getTemplateSeq(i)
	# get template sequence via virtual field
	i$templateSeq
	# set template sequence
	setTemplateSeq(i, NucleotideSequence(string="C"));
	# generate insert
	generateInsert(i)
	# set template sequence via virtual field
	i$templateSeq<-NucleotideSequence(string="G")
	# generate insert
	generateInsert(i)
 

phylosim documentation built on May 29, 2017, 3:21 p.m.

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