Description Usage Arguments Value See Also
Creates an S4 SeqRec
1 2 | seqrec_gen(accssn, nm, txid, sq, dfln, orgnsm, ml_typ, rec_typ, vrsn, age,
lctn = NULL)
|
accssn |
Accession ID |
nm |
Sequence name |
txid |
Taxonomic ID of source organism |
sq |
Sequence |
dfln |
Definition line |
orgnsm |
Source organism name |
ml_typ |
Molecule type |
rec_typ |
Sequence record type |
vrsn |
Accession version |
age |
Number of days since upload |
lctn |
Location numbers for features, e.g. '1..200' |
SeqRec
Other run-private: batcher
,
blast_clstr
, blast_filter
,
blast_setup
, blast_sqs
,
blastcache_load
,
blastcache_save
, blastdb_gen
,
blastn_run
, cache_rm
,
cache_setup
, clade_select
,
clstr2_calc
, clstr_all
,
clstr_direct
, clstr_sqs
,
clstr_subtree
, clstrarc_gen
,
clstrarc_join
, clstrrec_gen
,
clstrs_calc
, clstrs_join
,
clstrs_merge
,
clstrs_renumber
, clstrs_save
,
cmdln
, descendants_get
,
download_obj_check
, error
,
hierarchic_download
, info
,
ncbicache_load
,
ncbicache_save
, obj_check
,
obj_load
, obj_save
,
parameters_load
,
parameters_setup
, parent_get
,
progress_init
, progress_read
,
progress_reset
,
progress_save
, rank_get
,
safely_connect
,
search_and_cache
,
searchterm_gen
, seeds_blast
,
seq_download
, seqarc_gen
,
seqrec_augment
,
seqrec_convert
, seqrec_get
,
sids_check
, sids_get
,
sids_load
, sids_save
,
sqs_count
, sqs_load
,
sqs_save
, stage_args_check
,
stages_run
, tax_download
,
taxdict_gen
, taxtree_gen
,
txids_get
, txnds_count
,
warn
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