inst/doc/fitaci-FAQ.R

In plantecophys: Modelling and Analysis of Leaf Gas Exchange Data

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#  citation("plantecophys")

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packageVersion("plantecophys")

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library(plantecophys)

# Assume a mesophyll conductance of 0.2 mol m-2 s-1 bar-1
f <- fitaci(acidata1, gmeso=0.2)

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# Assume a mesophyll conductance of 0.2 mol m-2 s-1 bar-1
acidata1$Cc <- with(acidata1, Ci - Photo/0.2)

# Fit normally, but make sure to use Cc!
f <- fitaci(acidata1, varnames=list(ALEAF="Photo", Ci="Cc", Tleaf="Tleaf", PPFD="PARi"))