platetools: Tools and Plots for Multi-Well Plates
Version 0.0.2

Collection of functions for working with multi-well microtitre plates, mainly 96, 384 and 1536 well plates.

Browse man pages Browse package API and functions Browse package files

AuthorScott Warchal [aut, cre]
Date of publication2016-10-05 14:37:45
MaintainerScott Warchal <s.warchal@sms.ed.ac.uk>
LicenseMIT + file LICENSE
Version0.0.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("platetools")

Man pages

b_grid: Plots multiple b-scored normalised platemaps
bhit_map: Platemap to identify 'hits' following a B-score normalisation
b_map: Plots a heatmap of b-score normalised values in a plate...
b_score: 2 way median polish
check_plate_input: checks plate input for dodgy well plate combinations
dist_map: Plots distributions per well in a plate layout
fill_plate: Fill in missing wells
hit_grid: Plots multiple platemaps with and identifies hits
hit_map: Platemap to identify 'hits' in a screen
is_1536: internal 1536 plate function for plate_map
list_to_dataframe: Converts list to a dataframe in a sensible way
med_smooth: 2-way median smooth
missing_wells: Returns wells that are missing from a complete plate
num_to_well: Converts numbers to well labels
pc_grid: Plots multiple platemaps as a heatmap of the first principal...
pchit_grid: Plots multiple heatmaps identifying hits from the first...
pchit_map: Plots a heatmap identifying hits from the first principal...
pc_map: Principal component heatmap in a plate layout
plate_effect: Two way-median smooth on a plate map
plate_map: creates dataframe of row,column,data from wellID and data
plate_map_grid: creates dataframe of row, column, plate_id from data...
plate_map_grid_scale: creates dataframe of row, column, plate_id from data...
plate_map_multiple: row, column for multiple features
plate_map_scale: creates dataframe of row, column, and scaled data from well...
plate_matrix: plate layout matrix from well IDs
plt1536: ggplot plate object
plt384: ggplot plate object
plt96: ggplot plate object
raw_grid: Plots multiple platemaps with heatmap of raw values
raw_map: Plots a platemap with heatmap of raw values
read_map: Annotates dataframe with metadata in a platemap matrix
readmap_data: example data in a plate map form
rotate_plate: rotates matrix by 180 degrees
well_to_num: Converts well labels to numbers
z_grid: Plots multiple platemaps with heatmap of scaled values
z_map: Plots a platemap with heatmap of scaled values

Functions

b_grid Man page Source code
b_map Man page Source code
b_score Man page Source code
bhit_map Man page Source code
check_plate_input Man page Source code
dist_map Man page Source code
fill_plate Man page Source code
hit_grid Man page Source code
hit_map Man page Source code
is_1536 Man page Source code
list_to_dataframe Man page Source code
med_smooth Man page Source code
missing_wells Man page Source code
num_to_well Man page Source code
pc_grid Man page Source code
pc_map Man page Source code
pchit_grid Man page Source code
pchit_map Man page Source code
plate_effect Man page Source code
plate_map Man page Source code
plate_map_grid Man page Source code
plate_map_grid_scale Man page Source code
plate_map_multiple Man page Source code
plate_map_scale Man page Source code
plate_matrix Man page Source code
plt1536 Man page Source code
plt384 Man page Source code
plt96 Man page Source code
raw_grid Man page Source code
raw_map Man page Source code
read_map Man page Source code
readmap_data Man page
rotate_plate Man page Source code
well_to_num Man page Source code
z_grid Man page Source code
z_map Man page Source code

Files

tests
tests/testthat.R
tests/testthat
tests/testthat/test-grid_plots.R
tests/testthat/test-plot_wrapper.R
tests/testthat/test-missing_wells.R
tests/testthat/test-fill_plate.R
tests/testthat/test-read_map.R
tests/testthat/test-rotate_plate.R
tests/testthat/test-basic_plots.R
tests/testthat/test-num_to_well.R
tests/testthat/test-plate_effects.R
tests/testthat/test-plate_map.R
tests/testthat/test-well_to_num.R
tests/testthat/test-plate_matrix.R
tests/testthat/test-med_smooth.R
NAMESPACE
data
data/readmap_data.rda
R
R/plot_wrapper.R
R/med_smooth.R
R/raw_grid.R
R/pc_map.R
R/pc_grid.R
R/rotate_plate.R
R/plate_matrix.R
R/dist_map.R
R/z_map.R
R/missing_wells.R
R/b_grid.R
R/data.R
R/z_grid.R
R/well_to_num.R
R/b_map.R
R/hit_grid.R
R/fill_plate.R
R/check_plate_input.R
R/bhit_map.R
R/read_map.R
R/plate_map.R
R/hit_map.R
R/num_to_well.R
R/raw_map.R
R/pchit_grid.R
R/pchit_map.R
MD5
DESCRIPTION
man
man/pchit_grid.Rd
man/z_grid.Rd
man/is_1536.Rd
man/z_map.Rd
man/plate_map_scale.Rd
man/pchit_map.Rd
man/missing_wells.Rd
man/rotate_plate.Rd
man/b_score.Rd
man/pc_grid.Rd
man/plate_map_multiple.Rd
man/plate_map_grid_scale.Rd
man/plate_effect.Rd
man/med_smooth.Rd
man/num_to_well.Rd
man/b_grid.Rd
man/raw_grid.Rd
man/fill_plate.Rd
man/hit_grid.Rd
man/plt1536.Rd
man/list_to_dataframe.Rd
man/bhit_map.Rd
man/plate_map_grid.Rd
man/plate_matrix.Rd
man/well_to_num.Rd
man/plate_map.Rd
man/plt384.Rd
man/raw_map.Rd
man/read_map.Rd
man/plt96.Rd
man/hit_map.Rd
man/readmap_data.Rd
man/pc_map.Rd
man/dist_map.Rd
man/check_plate_input.Rd
man/b_map.Rd
LICENSE
platetools documentation built on May 20, 2017, 12:04 a.m.