med_smooth: 2-way median smooth

In platetools: Tools and Plots for Multi-Well Plates

Description

Given a platemap produced by plate_map, will return a dataframe with after values have been transformed into a matrix mirroring the plate structure and undergoing a 2-way median polish to remove row or column effects

Usage

med_smooth(
  platemap,
  plate,
  eps = 0.01,
  maxiter = 10,
  trace.iter = FALSE,
  na.rm = TRUE
)

Arguments

platemap	dataframe produced by plate_map
plate	numeric, number of wells in plate, either 96 or 384
eps	real number greater than 0. A tolerance for divergence
maxiter	int, the maximum number of iterations
trace.iter	Boolean, should progress in convergence be reported?
na.rm	Boolean, should missing values be removed?

Value

A dataframe consisting of two column, wellID and polished numeric values

platetools documentation built on June 3, 2021, 5:06 p.m.