b_grid: Plots multiple b-scored normalised platemaps

In platetools: Tools and Plots for Multi-Well Plates

Plots multiple b-scored normalised platemaps

Description

Transforms numerical values using the b-score normalisation process to account for row and column effects. Uses well and plate labels to plot the normalised values in the form of microtitre plates. Works for 96, 384 and 1536 well plates.

Usage

b_grid(
  data,
  well,
  plate_id,
  plate = 96,
  eps = 0.01,
  maxiter = 10,
  trace.iter = FALSE,
  na.rm = FALSE,
  ...
)

Arguments

data	Numerical values to be plotted
well	Vector of well identifiers e.g "A01"
plate_id	Vector of plate identifiers e.g "Plate_1"
plate	Number of wells in complete plate (96, 384 or 1536)
eps	real number greater than 0. A tolerance for divergence
maxiter	int, the maximum number of iterations
trace.iter	Boolean, should progress in convergence be reported?
na.rm	Boolean, should missing values be removed?
...	additional parameters to plot wrappers

Value

ggplot plot

Examples

df01 <- data.frame(well = num_to_well(1:96),
                   vals = rnorm(96),
                   plate = 1)

df02 <- data.frame(well = num_to_well(1:96),
                   vals = rnorm(96),
                   plate = 2)

df <- rbind(df01, df02)

b_grid(data = df$vals,
       well = df$well,
       plate_id = df$plate,
       plate = 96)

platetools documentation built on May 29, 2024, 8:43 a.m.