hit_map: Platemap to identify 'hits' in a screen

In platetools: Tools and Plots for Multi-Well Plates

Platemap to identify 'hits' in a screen

Description

Produces a plot in the form of a micro-titre layout, with colours indicating wells above or below a nominated threshold.

Usage

hit_map(data, well, plate = 96, threshold = 2, palette = "Spectral", ...)

Arguments

data	Vector of numerical values to score
well	Vector of well identifiers e.g "A01"
plate	Number of wells in complete plate (6, 12, 24, 48, 96, 384 or 1536)
threshold	Numerical value of standard deviations from the mean for a well to be classified as a 'hit'. Default it +/- 2 SD
palette	RColorBrewer palette
...	additional parameters for plot wrappers

Value

ggplot plot

Examples

df <- data.frame(vals = rnorm(1:384),
                 well = num_to_well(1:384, plate = 384))

hit_map(data = df$vals,
        well = df$well,
        plate = 384,
        threshold = 3)

platetools documentation built on May 29, 2024, 8:43 a.m.