checkLoadingMat: Checking the path of the loading matrix
In plinkQC: Genotype Quality Control with 'PLINK'

checkLoadingMat

R Documentation

Checking the path of the loading matrix

Description

Makes sure that the loading matrix is located at the filepath stored in path2load_mat

Usage

checkLoadingMat(path2load_mat)

Arguments

path2load_mat

[character] /path/to/directory where loading matrices are kept. This can be downloaded from the github repo. Note that the name of the file before the .eigenvec.allele or .acount must be included in file path.

Examples

path2load_mat <- '/path/to/loading_mat/merged_chrs.postQC.train.pca'
## Not run: 
# the following code is not run on package build, as the path2load_mat on the
# user system is not known.
checkLoadingMat(path2load_mat = path2load_mat)

## End(Not run)

plinkQC documentation built on Nov. 26, 2025, 1:07 a.m.