checkPlink2: Check PLINK2 software access
In plinkQC: Genotype Quality Control with 'PLINK'
checkPlink2 R Documentation
Check PLINK2 software access
Description
checkPlink checks that the PLINK software version 2.0
(https://www.cog-genomics.org/plink/2.0/)
can be found from system call.
Usage
checkPlink2(path2plink2 = NULL)
Arguments
path2plink2
[character] Absolute path to PLINK executable
(https://www.cog-genomics.org/plink/2.0/) i.e.
plink 2 should be accessible as path2plink -h. The full name of the executable
should be specified: for windows OS, this means path/plink.exe, for unix
platforms this is path/plink. If not provided, assumed that PATH set-up works
and PLINK will be found by exec('plink').
Value
Path to PLINK version 2.0 executable.
plinkQC documentation built on Nov. 26, 2025, 1:07 a.m.
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| checkPlink2 | R Documentation |
Check PLINK2 software access
Description
checkPlink checks that the PLINK software version 2.0 (https://www.cog-genomics.org/plink/2.0/) can be found from system call.
Usage
checkPlink2(path2plink2 = NULL)
Arguments
path2plink2 |
[character] Absolute path to PLINK executable
(https://www.cog-genomics.org/plink/2.0/) i.e.
plink 2 should be accessible as path2plink -h. The full name of the executable
should be specified: for windows OS, this means path/plink.exe, for unix
platforms this is path/plink. If not provided, assumed that PATH set-up works
and PLINK will be found by |
Value
Path to PLINK version 2.0 executable.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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