Man pages for plotthis
High-Level Plotting Built Upon 'ggplot2' and Other Plotting Packages
| adjcolors | Convert a color with arbitrary transparency to a fixed color |
| adjust_network_layout | Adjust_network_layout |
| AreaPlot | Area plot |
| AreaPlotAtomic | Atomic area plot |
| barplot | Bar Plot |
| BarPlotAtomic | Atomic bar plot |
| BarPlotGrouped | Bar plot with groups |
| BarPlotSingle | BarPlotSingle |
| bg_layer | Get a ggplot layer for background |
| blend_colors | Blend colors |
| blend_rgblist | Blend a list of colors |
| blend_to_color | Blend two colors |
| boxviolinplot | Box / Violin Plot |
| BoxViolinPlotAtomic | Atomic Box/Violin plot |
| BoxViolinPlot-internal | Box/Violin plot |
| calc_just | Calculate hjust and vjust based on angle |
| check_columns | Check the columns if columns found in the data |
| check_legend | check_legend Check if the legend.position and... |
| check_palcolor | check_palcolor Check if the palcolor can be properly used |
| check_palette | check_palette Check if the palette can be properly used |
| chordplot | Chord / Circos plot |
| ChordPlotAtomic | Atomic chord plot |
| ClustreePlot | Clustree Plot |
| ClustreePlotAtomic | Atomic function for clustree plot |
| combine_plots | Combine plots into one |
| common_args | Common arguments for plots |
| CorPairsPlot | CorPairsPlot |
| CorPairsPlotAtomic | Atomic Correlation Pairs Plot |
| CorPlot | CorPlot |
| CorPlotAtomic | Atomic Correlation Plot |
| densityhistoplot | Density Plot / Histogram |
| DensityHistoPlotAtomic | Atomic density/histogram plot |
| detect_upset_datatype | Detect the type of the input data for Upset plot |
| detect_venn_datatype | Detect the datatype of the input data of Venn diagram |
| dim_example | An example data for dimensionality reduction plot |
| dimplot | DimPLot / FeatureDimPlot |
| DimPlotAtomic | Atomic Dimension Reduction Plot without splitting the data |
| dot-anno_ggcat | Heatmap annotation function for categorical data |
| dot-compute_velocity_on_grid | Compute velocity on grid |
| dot_flip_y | Flip values on the y-axis direction, and negate the... |
| dotplot | Dot Plot / Scatter Plot / Lollipop Plot |
| DotPlotAtomic | Dot Plot without splitting the data |
| dot-prepare_extent | Prepare the extent for spatial plots |
| dot-wrap_spatial_layers | Wrap spatial plot if plotted independently |
| element_textbox | Theme element that add a box to the text |
| enrich_example | An example of clusterProfiler enrichment result |
| enrichmap1 | Enrichment Map/Network |
| EnrichMapAtomic | Atomic Enrichment Map |
| enrich_multidb_example | An example of clusterProfiler enrichment result with multiple... |
| EnrichNetworkAtomic | Atomic Enrichment Network |
| facet_plot | Facetting a plot |
| get_cutoffs_data | Prepare the cutoff data for the ROC curve |
| gggrob | Get the grid.draw-able ggplot grob The output from ggplotGrob... |
| gsea | GSEA plots |
| gsea_example | An example of GSEA result from fgsea package |
| GSEAPlotAtomic | GSEA plot for a single term |
| gsea_running_score | Get the running enrichment score of a gene set |
| Heatmap | Heatmap |
| heatmap-anno | Heatmap annotation functions |
| HeatmapAtomic | Atomic heatmap without split |
| heatmap-layer | Heatmap layer functions used to draw on the heatmap cells |
| join_heatmap_meta | Join the meta data to the main data frame for heatmap |
| LinePlot | Line Plot |
| LinePlotAtomic | LinePlotAtomic |
| LinePlotGrouped | LinePlotGrouped |
| LinePlotSingle | LinePlotSingle |
| ManhattanPlot | ManhattanPlot |
| ManhattanPlotAtomic | ManhattanPlotAtomic |
| Network | Network |
| NetworkAtomic | NetworkAtomic |
| norm_expansion | Expand the plot area with CSS-like padding |
| palette_list | A list of palettes for use in data visualization |
| palette_this | Color palettes collected in plotthis. |
| PieChart | Pie Chart |
| PieChartAtomic | Pie chart without data splitting |
| prepare_enrichr_result | Process the enrichment results from Enrichr |
| prepare_fgsea_result | Prepare fgsea result for plotting |
| prepare_upset_data | Prepare data for Upset plot |
| prepare_venn_data | Prepare data for Venn diagram |
| process_heatmap_data | Process/normalize data passed to 'Heatmap()' |
| process_theme | Process theme to allow 'ggplot2::theme_minimal' to work |
| QQPlot | QQ plot |
| QQPlotAtomic | Atomic QQ plot |
| radarplot | Radar plot / Spider plot |
| RadarPlotAtomic | Atomic Radar plot |
| RarefactionPlot | RarefactionPlot |
| RarefactionPlotAtomic | RarefactionPlotAtomic |
| rgba_to_rgb | Convert RGBA to RGB |
| RidgePlot | Ridge Plot |
| RidgePlotAtomic | Atomic ridge plot |
| RingPlot | Ring Plot |
| RingPlotAtomic | RingPlotAtomic |
| ROCCurve | ROC curve |
| ROCCurveAtomic | Atomic ROC curve |
| sankeyplot | Sankey / Alluvial Plot |
| SankeyPlotAtomic | Atomic Sankey plot |
| ScatterPlot | Scatter Plot |
| ScatterPlotAtomic | Scatter Plot Atomic |
| show_palettes | Show the color palettes |
| spatialplots | Plots for spatial elements |
| SplitBarPlotAtomic | SplitBarPlotAtomic |
| theme_blank | Blank theme |
| theme_box | Box theme |
| theme_this | A ggplot2 theme and palettes for plotthis Borrowed from the... |
| TrendPlot | Trend plot |
| TrendPlotAtomic | Atomic trend plot |
| UpsetPlot | Upset Plot |
| UpsetPlotAtomic | Atomic Upset plot |
| validate_common_args | Validate common arguments |
| VelocityPlot | Cell velocity plot |
| VennDiagram | Venn diagram |
| VennDiagramAtomic | Atomic Venn diagram |
| VolcanoPlot | Volcano plot |
| VolcanoPlotAtomic | Atomic volcano plot |
| WordCloudPlot | Word Cloud Plot |
| WordCloudPlotAtomic | Word cloud without data splitting |
| words_excluded | Excluded words in keyword enrichment analysis and extraction |
