API for pomp
Statistical Inference for Partially Observed Markov Processes

Global functions
Csnippet	Man page
LondonYorke	Man page
SIR_models	Man page
[,listie-method	Man page
[-listie	Man page
abc	Man page
abc,ANY-method	Man page
abc,abcd_pomp-method	Man page
abc,data.frame-method	Man page
abc,missing-method	Man page
abc,pomp-method	Man page
abc,probed_pomp-method	Man page
accumvars	Man page
append_data	Man page
as.character.Csnippet	Source code
as.data.frame	Man page
as.data.frame.abcList	Man page
as.data.frame.bsmcd_pomp	Man page
as.data.frame.kalmand_pomp	Man page
as.data.frame.mif2List	Man page
as.data.frame.pfilterList	Man page
as.data.frame.pfilterd_pomp	Man page
as.data.frame.pmcmcList	Man page
as.data.frame.pomp	Man page
as.data.frame.pompList	Man page
as.data.frame.probed_pomp	Man page
as.data.frame.wpfilterd_pomp	Man page
as_pomp	Man page
bake	Man page
basic_components	Man page
basic_probes	Man page
betabinomial	Man page
blowflies	Man page
blowflies1	Man page
blowflies2	Man page
bsflu	Man page
bsmc2	Man page
bsmc2,ANY-method	Man page
bsmc2,data.frame-method	Man page
bsmc2,missing-method	Man page
bsmc2,pomp-method	Man page
bspline_basis	Man page
bsplines	Man page
c	Man page
c.Pomp	Man page
childhood_disease_data	Man page
coef	Man page
coef,listie-method	Man page
coef,objfun-method	Man page
coef,pomp-method	Man page
coef<-	Man page
coef<-,missing-method	Man page
coef<-,objfun-method	Man page
coef<-,pomp-method	Man page
compartmental_models	Man page
conc	Man page
conc,Abc-method	Man page
conc,Mif2-method	Man page
conc,Pfilter-method	Man page
conc,Pmcmc-method	Man page
conc,Pomp-method	Man page
concat	Man page
cond_logLik	Man page
cond_logLik,ANY-method	Man page
cond_logLik,bsmcd_pomp-method	Man page
cond_logLik,kalmand_pomp-method	Man page
cond_logLik,missing-method	Man page
cond_logLik,pfilterList-method	Man page
cond_logLik,pfilterd_pomp-method	Man page
cond_logLik,wpfilterd_pomp-method	Man page
continue	Man page
continue,ANY-method	Man page
continue,abcd_pomp-method	Man page
continue,mif2d_pomp-method	Man page
continue,missing-method	Man page
continue,pmcmcd_pomp-method	Man page
covariate_table	Man page
covariate_table,ANY-method	Man page
covariate_table,character-method	Man page
covariate_table,missing-method	Man page
covariate_table,numeric-method	Man page
covariates	Man page
covmat	Man page
covmat,ANY-method	Man page
covmat,abcList-method	Man page
covmat,abcd_pomp-method	Man page
covmat,missing-method	Man page
covmat,pmcmcList-method	Man page
covmat,pmcmcd_pomp-method	Man page
covmat,probed_pomp-method	Man page
dacca	Man page
dbetabinom	Man page
design	Man page
deulermultinom	Man page
dinit	Man page
dinit,ANY-method	Man page
dinit,missing-method	Man page
dinit,pomp-method	Man page
dinit_spec	Man page
discrete_time	Man page
dmeasure	Man page
dmeasure,ANY-method	Man page
dmeasure,missing-method	Man page
dmeasure,pomp-method	Man page
dmeasure_spec	Man page
dprior	Man page
dprior,ANY-method	Man page
dprior,missing-method	Man page
dprior,pomp-method	Man page
dprocess	Man page
dprocess,ANY-method	Man page
dprocess,missing-method	Man page
dprocess,pomp-method	Man page
dprocess_spec	Man page
eakf	Man page
eakf,ANY-method	Man page
eakf,data.frame-method	Man page
eakf,missing-method	Man page
eakf,pomp-method	Man page
ebola	Man page
ebolaModel	Man page
ebolaWA2014	Man page
eeulermultinom	Man page
eff_sample_size	Man page
eff_sample_size,ANY-method	Man page
eff_sample_size,bsmcd_pomp-method	Man page
eff_sample_size,missing-method	Man page
eff_sample_size,pfilterList-method	Man page
eff_sample_size,pfilterd_pomp-method	Man page
eff_sample_size,wpfilterd_pomp-method	Man page
elementary_algorithms	Man page
emeasure	Man page
emeasure,ANY-method	Man page
emeasure,missing-method	Man page
emeasure,pomp-method	Man page
emeasure_spec	Man page
enkf	Man page
enkf,ANY-method	Man page
enkf,data.frame-method	Man page
enkf,kalmand_pomp-method	Man page
enkf,missing-method	Man page
enkf,pomp-method	Man page
estimation_algorithms	Man page
euler	Man page
eulermultinom	Man page
ewcitmeas	Man page
ewmeas	Man page
expit	Man page
filter_mean	Man page
filter_mean,ANY-method	Man page
filter_mean,kalmand_pomp-method	Man page
filter_mean,missing-method	Man page
filter_mean,pfilterd_pomp-method	Man page
filter_traj	Man page
filter_traj,ANY-method	Man page
filter_traj,listie-method	Man page
filter_traj,missing-method	Man page
filter_traj,pfilterd_pomp-method	Man page
filter_traj,pmcmcd_pomp-method	Man page
flow	Man page
flow,ANY-method	Man page
flow,missing-method	Man page
flow,pomp-method	Man page
forecast	Man page
forecast,ANY-method	Man page
forecast,kalmand_pomp-method	Man page
forecast,missing-method	Man page
forecast,pfilterd_pomp-method	Man page
freeze	Man page
gillespie	Man page
gillespie_hl	Man page
gompertz	Man page
hitch	Man page
inv_log_barycentric	Man page
kalman	Man page
kalmanFilter	Man page
listie	Man page
load	Man page
logLik	Man page
logLik,ANY-method	Man page
logLik,bsmcd_pomp-method	Man page
logLik,kalmand_pomp-method	Man page
logLik,listie-method	Man page
logLik,missing-method	Man page
logLik,nlf_objfun-method	Man page
logLik,objfun-method	Man page
logLik,pfilterd_pomp-method	Man page
logLik,pmcmcd_pomp-method	Man page
logLik,probed_pomp-method	Man page
logLik,spect_match_objfun-method	Man page
logLik,wpfilterd_pomp-method	Man page
log_barycentric	Man page
logit	Man page
logmeanexp	Man page
lookup	Man page
make_tensorbasis	Source code
map	Man page
mcap	Man page
melt	Man page
melt,ANY-method	Man page
melt,array-method	Man page
melt,list-method	Man page
melt,missing-method	Man page
mif2	Man page
mif2,ANY-method	Man page
mif2,data.frame-method	Man page
mif2,mif2d_pomp-method	Man page
mif2,missing-method	Man page
mif2,pfilterd_pomp-method	Man page
mif2,pomp-method	Man page
mvn_diag_rw	Man page
mvn_rw	Man page
mvn_rw_adaptive	Man page
nlf	Man page
nlf_objfun	Man page
nlf_objfun,ANY-method	Man page
nlf_objfun,data.frame-method	Man page
nlf_objfun,missing-method	Man page
nlf_objfun,nlf_objfun-method	Man page
nlf_objfun,pomp-method	Man page
objfun	Man page
obs	Man page
obs,ANY-method	Man page
obs,listie-method	Man page
obs,missing-method	Man page
obs,pomp-method	Man page
onestep	Man page
ou2	Man page
pMess	Man page
pMess_	Man page
pStop	Man page
pStop_	Man page
pWarn	Man page
pWarn_	Man page
parameter_trans	Man page
parameter_trans,ANY,ANY-method	Man page
parameter_trans,ANY,missing-method	Man page
parameter_trans,Csnippet,Csnippet-method	Man page
parameter_trans,NULL,NULL-method	Man page
parameter_trans,character,character-method	Man page
parameter_trans,function,function-method	Man page
parameter_trans,missing,ANY-method	Man page
parameter_trans,missing,missing-method	Man page
parameter_trans,pomp_fun,pomp_fun-method	Man page
parmat	Man page
parmat,ANY-method	Man page
parmat,array-method	Man page
parmat,data.frame-method	Man page
parmat,missing-method	Man page
parmat,numeric-method	Man page
partrans	Man page
partrans,ANY-method	Man page
partrans,missing-method	Man page
partrans,objfun-method	Man page
partrans,pomp-method	Man page
parus	Man page
periodic_bspline_basis	Man page
pfilter	Man page
pfilter,ANY-method	Man page
pfilter,data.frame-method	Man page
pfilter,missing-method	Man page
pfilter,objfun-method	Man page
pfilter,pfilterd_pomp-method	Man page
pfilter,pomp-method	Man page
plot	Man page
plot,Abc-method	Man page
plot,Mif2-method	Man page
plot,Pmcmc-method	Man page
plot,bsmcd_pomp-method	Man page
plot,missing-method	Man page
plot,pomp-method	Man page
plot,pomp_plottable-method	Man page
plot,probe_match_objfun-method	Man page
plot,probed_pomp-method	Man page
plot,spect_match_objfun-method	Man page
plot,spectd_pomp-method	Man page
pmcmc	Man page
pmcmc,ANY-method	Man page
pmcmc,data.frame-method	Man page
pmcmc,missing-method	Man page
pmcmc,pfilterd_pomp-method	Man page
pmcmc,pmcmcd_pomp-method	Man page
pmcmc,pomp-method	Man page
pomp	Man page
pomp,package	Man page
pomp-class	Man page
pomp-package	Man page
pompLoad	Man page
pompLoad,objfun-method	Man page
pompLoad,pomp-method	Man page
pompUnload	Man page
pompUnload,objfun-method	Man page
pompUnload,pomp-method	Man page
pomp_constructor	Man page
pomp_examples	Man page
pomp_fun	Man page
pomp_fun,Csnippet-method	Man page
pomp_fun,character-method	Man page
pomp_fun,function-method	Man page
pomp_fun,missing-method	Man page
pomp_fun,pomp_fun-method	Man page
pred_mean	Man page
pred_mean,ANY-method	Man page
pred_mean,kalmand_pomp-method	Man page
pred_mean,missing-method	Man page
pred_mean,pfilterd_pomp-method	Man page
pred_var	Man page
pred_var,ANY-method	Man page
pred_var,missing-method	Man page
pred_var,pfilterd_pomp-method	Man page
print	Man page
print,listie-method	Man page
print,pomp_fun-method	Man page
print,unshowable-method	Man page
prior_spec	Man page
priors	Man page
probe	Man page
probe,ANY-method	Man page
probe,data.frame-method	Man page
probe,missing-method	Man page
probe,objfun-method	Man page
probe,pomp-method	Man page
probe,probe_match_objfun-method	Man page
probe,probed_pomp-method	Man page
probe_acf	Man page
probe_ccf	Man page
probe_marginal	Man page
probe_match	Man page
probe_mean	Man page
probe_median	Man page
probe_nlar	Man page
probe_objfun	Man page
probe_objfun,ANY-method	Man page
probe_objfun,data.frame-method	Man page
probe_objfun,missing-method	Man page
probe_objfun,pomp-method	Man page
probe_objfun,probe_match_objfun-method	Man page
probe_objfun,probed_pomp-method	Man page
probe_period	Man page
probe_quantile	Man page
probe_sd	Man page
probe_var	Man page
profile_design	Man page
proposals	Man page
rbetabinom	Man page
repair_lookup_table	Man page
reproducibility_tools	Man page
resample	Man page
reulermultinom	Man page
rgammawn	Man page
ricker	Man page
rinit	Man page
rinit,ANY-method	Man page
rinit,missing-method	Man page
rinit,pomp-method	Man page
rinit_spec	Man page
rmeasure	Man page
rmeasure,ANY-method	Man page
rmeasure,missing-method	Man page
rmeasure,pomp-method	Man page
rmeasure_spec	Man page
rprior	Man page
rprior,ANY-method	Man page
rprior,missing-method	Man page
rprior,pomp-method	Man page
rprocess	Man page
rprocess,ANY-method	Man page
rprocess,missing-method	Man page
rprocess,pomp-method	Man page
rprocess_spec	Man page
runif_design	Man page
rw2	Man page
rw_sd	Man page
sannbox	Man page
saved_states	Man page
saved_states,ANY-method	Man page
saved_states,missing-method	Man page
saved_states,pfilterList-method	Man page
saved_states,pfilterd_pomp-method	Man page
show	Man page
show,covartable-method	Man page
show,discreteRprocPlugin-method	Man page
show,eulerRprocPlugin-method	Man page
show,gillespieRprocPlugin-method	Man page
show,listie-method	Man page
show,mapPlugin-method	Man page
show,onestepRprocPlugin-method	Man page
show,partransPlugin-method	Man page
show,pomp_fun-method	Man page
show,rprocPlugin-method	Man page
show,skelPlugin-method	Man page
show,unshowable-method	Man page
show,vectorfieldPlugin-method	Man page
simulate	Man page
simulate,data.frame-method	Man page
simulate,missing-method	Man page
simulate,objfun-method	Man page
simulate,pomp-method	Man page
sir	Man page
sir2	Man page
skeleton	Man page
skeleton,ANY-method	Man page
skeleton,missing-method	Man page
skeleton,pomp-method	Man page
skeleton_spec	Man page
slice_design	Man page
sobol_design	Man page
solibs<-	Man page
solibs<-,pomp-method	Man page
spect	Man page
spect,ANY-method	Man page
spect,data.frame-method	Man page
spect,missing-method	Man page
spect,objfun-method	Man page
spect,pomp-method	Man page
spect,spect_match_objfun-method	Man page
spect,spectd_pomp-method	Man page
spect_match	Man page
spect_objfun	Man page
spect_objfun,ANY-method	Man page
spect_objfun,data.frame-method	Man page
spect_objfun,missing-method	Man page
spect_objfun,pomp-method	Man page
spect_objfun,spect_match_objfun-method	Man page
spect_objfun,spectd_pomp-method	Man page
spy	Man page
spy,ANY-method	Man page
spy,missing-method	Man page
spy,pomp-method	Man page
states	Man page
states,ANY-method	Man page
states,listie-method	Man page
states,missing-method	Man page
states,pomp-method	Man page
stew	Man page
summary	Man page
summary,objfun-method	Man page
summary,probed_pomp-method	Man page
summary,spectd_pomp-method	Man page
systematic_resample	Man page
time	Man page
time,listie-method	Man page
time,missing-method	Man page
time,pomp-method	Man page
time<-	Man page
time<-,pomp-method	Man page
timezero	Man page
timezero,ANY-method	Man page
timezero,missing-method	Man page
timezero,pomp-method	Man page
timezero<-	Man page
timezero<-,ANY-method	Man page
timezero<-,missing-method	Man page
timezero<-,pomp-method	Man page
traces	Man page
traces,ANY-method	Man page
traces,abcList-method	Man page
traces,abcd_pomp-method	Man page
traces,mif2List-method	Man page
traces,mif2d_pomp-method	Man page
traces,missing-method	Man page
traces,pmcmcList-method	Man page
traces,pmcmcd_pomp-method	Man page
traj_match	Man page
traj_objfun	Man page
traj_objfun,ANY-method	Man page
traj_objfun,data.frame-method	Man page
traj_objfun,missing-method	Man page
traj_objfun,pomp-method	Man page
traj_objfun,traj_match_objfun-method	Man page
trajectory	Man page
trajectory,ANY-method	Man page
trajectory,data.frame-method	Man page
trajectory,missing-method	Man page
trajectory,pomp-method	Man page
trajectory,traj_match_objfun-method	Man page
transformations	Man page
undefined	Man page
undefined,pomp_fun-method	Man page
undefined,rprocPlugin-method	Man page
undefined,skelPlugin-method	Man page
userdata	Man page
vectorfield	Man page
verhulst	Man page
vmeasure	Man page
vmeasure,ANY-method	Man page
vmeasure,missing-method	Man page
vmeasure,pomp-method	Man page
vmeasure_spec	Man page
window	Man page
window,pomp-method	Man page
workhorses	Man page
wpfilter	Man page
wpfilter,ANY-method	Man page
wpfilter,data.frame-method	Man page
wpfilter,missing-method	Man page
wpfilter,pomp-method	Man page
wpfilter,wpfilterd_pomp-method	Man page
wquant	Man page