poolfstat: Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data

Functions for the computation of f- and D-statistics (estimation of 'Fst', Patterson's 'F2', 'F3', 'F3*', 'F4' and D parameters) in population genomics studies from allele count or Pool-Seq read count data and for the fitting, building and visualization of admixture graphs. The package also includes several utilities to manipulate Pool-Seq data stored in standard format (e.g., such as 'vcf' files or 'rsync' files generated by the the 'PoPoolation' software) and perform conversion to alternative format (as used in the 'BayPass' and 'SelEstim' software). As of version 2.0, the package also includes utilities to manipulate standard allele count data (e.g., stored in 'TreeMix', 'BayPass' or 'SelEstim' format).

Package details

AuthorMathieu Gautier
MaintainerMathieu Gautier <mathieu.gautier@inrae.fr>
LicenseGPL (>= 2)
Version2.0.0
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("poolfstat")

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poolfstat documentation built on May 27, 2021, 5:06 p.m.