compute_snpQ1onepop: compute_snpQ1onepop

In poolfstat: Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data

compute_snpQ1onepop

Description

Compute SNP-specific Q1 for one pop

Usage

.compute_snpQ1onepop(refcount, totcount, weight)

Arguments

refcount	Vector of nsnp counts (genotype or reads) for the reference allele
totcount	Vector of nsnp total counts or read coverages
weight	Numeric (w=1 for allele count data and w=poolsize/(poolsize-1) for PoolSeq data)

Details

Compute SNP-specific Q1 for one pop. samples.

Value

Return a vector of length nsnps with SNP-specific Q1

Examples

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poolfstat documentation built on April 4, 2025, 1:49 a.m.