compute_snpQ2onepair: compute_snpQ2onepair

In poolfstat: Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data

compute_snpQ2onepair

Description

Compute SNP-specific Q2 for a single pair of samples

Usage

.compute_snpQ2onepair(refcount1, refcount2, totcount1, totcount2)

Arguments

refcount1	Vector of count (genotype or reads) for the reference allele in the first sample
refcount2	Vector of count (genotype or reads) for the reference allele in the second sample
totcount1	Vector of total count or read coverages in the first sample
totcount2	Vector of total count or read coverages in the second sample

Details

Compute SNP-specific Q2 for a single pair of samples

Value

Return a vector of length nsnps with SNP-specific Q1

Examples

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poolfstat documentation built on April 4, 2025, 1:49 a.m.