compute_F3fromF2: compute_F3fromF2

In poolfstat: Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data

compute_F3fromF2

Description

Compute all F3 from overall F2 values

Usage

.compute_F3fromF2(F2val, Hval, npops)

Arguments

F2val	Numeric vector of length nF2=(npop*(npop-1))/2 with all pairwise F2 estimates
Hval	Numeric vector of length npop with all within pop heterozygosity estimates
npops	Integer giving the number of populations

Details

Compute F3 and F3star estimates from F2 (and heterozygosities)

Value

Return a matrix of length nF3=npops*(npops-1)*(npops-2)/2 rows and 2 columns corresponding to the F3 and F3star estimates

Examples

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poolfstat documentation built on Sept. 8, 2023, 5:49 p.m.