countdata-class | R Documentation |
S4 class to represent a Count data set.
npops
The number of populations
nsnp
The number of SNPs
refallele.count
A matrix (nsnp rows and npops columns) with the allele counts for the reference allele
total.count
A matrix (nsnp rows and npops columns) with the total number of counts (i.e., twice the number of genotyped individual for diploid species and autosomal markers)
snp.info
A data frame (nsnp rows and 4 columns) detailing for each SNP, the chromosome (or scaffold), the position, Reference allele name and Alternate allele name (if available)
popnames
A vector of length npops with the corresponding population names
To generate countdata object, see genobaypass2countdata
and genotreemix2countdata
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