Files in poolfstat
Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data
MD5
ChangeLog
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/pooldata.subset.R
R/randomallele.pca.R
R/poolfstat-package.R
R/countdata.subset.R
R/genobaypass2countdata.R
R/genobaypass2pooldata.R
R/vcf2pooldata.R
R/make.example.files.R
R/pooldata2genoselestim.R
R/fit.graph.R
R/generate.graph.params.R
R/pooldata2genobaypass.R
R/add.leaf.R
R/graph.builder.R
R/genoselestim2pooldata.R
R/graph.params2qpGraphFiles.R
R/popsync2pooldata.R
R/is.fitted.graph.R
R/compute.pairwiseFST.R
R/is.graph.params.R
R/rooted.njtree.builder.R
R/is.pooldata.R
R/compute.F4ratio.R
R/out.objects.R
R/is.countdata.R
R/generate.jacknife.blocks.R
R/pooldata2diyabc.R
R/find.tree.popset.R
R/compare.fitted.fstats.R
R/compute.fstats.R
R/computeFST.R
R/plot_fstats.R
R/genotreemix2countdata.R
R/graph.params2symbolicfstats.R
src/fast_block_averages.cpp
src/RcppExports.cpp
src/extract_counts.cpp
inst/ex.vcf.gz
inst/ex.sync.gz
inst/CITATION
inst/doc/vignette.Rnw
inst/doc/vignette.pdf
build/vignette.rds
vignettes/poolfstat_vignette_6pops.pdf
vignettes/vignette.Rnw
man/compute_Q_bjmeans.Rd
man/compute_F4fromF2samples.Rd
man/compute.f4ratio.Rd
man/plot-fstats-method.Rd
man/bjack_cov.Rd
man/is.pairwisefst.Rd
man/compute_blockDdenom.Rd
man/genoselestim2pooldata.Rd
man/is.pooldata.Rd
man/poolfstat.Rd
man/pooldata.subset.Rd
man/find.tree.popset.Rd
man/heatmap-pairwisefst-method.Rd
man/compute_H1.Rd
man/countdata-class.Rd
man/fitted.graph-class.Rd
man/pairwisefst-class.Rd
man/scan_allele_info.Rd
man/genobaypass2pooldata.Rd
man/show-pooldata-method.Rd
man/poppair_idx.Rd
man/graph.params2symbolic.fstats.Rd
man/find_indelneighbor_idx.Rd
man/is.countdata.Rd
man/make.example.files.Rd
man/compute_F3fromF2samples.Rd
man/plot-fitted.graph-method.Rd
man/pooldata2genobaypass.Rd
man/add.leaf.Rd
man/compute_QmatfromF2samples.Rd
man/genobaypass2countdata.Rd
man/extract_nonvscan_counts.Rd
man/generateF3names.Rd
man/is.fstats.Rd
man/compute.pairwiseFST.Rd
man/compute_F2_bjmeans.Rd
man/show-fstats-method.Rd
man/show-fitted.graph-method.Rd
man/show-countdata-method.Rd
man/generate.jackknife.blocks.Rd
man/compute_Ddenom_bjmeans.Rd
man/plot-pairwisefst-method.Rd
man/countdata.subset.Rd
man/generate.graph.params.Rd
man/compute_F4fromF2.Rd
man/pooldata2genoselestim.Rd
man/extract_vscan_counts.Rd
man/is.graph.params.Rd
man/graph.params-class.Rd
man/genotreemix2countdata.Rd
man/compute.fstats.Rd
man/compute_Ddenom.Rd
man/rooted.njtree.builder.Rd
man/is.fitted.graph.Rd
man/graph.params2qpGraphFiles.Rd
man/plot_fstats.Rd
man/compute_F4DfromF2samples.Rd
man/show-pairwisefst-method.Rd
man/pooldata2diyabc.Rd
man/vcf2pooldata.Rd
man/graph.builder.Rd
man/popsync2pooldata.Rd
man/extract_allele_names.Rd
man/fstats-class.Rd
man/generateF4names.Rd
man/compare.fitted.fstats.Rd
man/show-graph.params-method.Rd
man/plot-graph.params-method.Rd
man/computeFST.Rd
man/pooldata-class.Rd
man/compute_F3fromF2.Rd
man/randomallele.pca.Rd
man/fit.graph.Rd
man/compute_Q2.Rd
