poppair_idx: poppair_idx

In poolfstat: Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data

poppair_idx

Description

Compute the index of the pairwise comparison from the idx of each pop

Arguments

idx_pop1	Integer giving the (0-indexed) index of the first pop
idx_pop2	Integer giving the (0-indexed) index of the second pop
nidx	Integer giving the total number of indexes (i.e., number of pops)

Details

If idx_pop2 < idx_pop1, indexes are reversed

Value

Return the (0-indexed) index for the row associated to the pairwise comparison in the ordered flat list of all (npop*(npop-1))/2 pairwise stats

Examples

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poolfstat documentation built on Sept. 8, 2023, 5:49 p.m.