compute_F2_bjmeans: compute_F2_bjmeans

In poolfstat: Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data

compute_F2_bjmeans

Description

Compute the the block-jackknife mean of F2 values

Usage

.compute_F2_bjmeans(snpQ1, snpQ2, q1_idx, snp_bj_id, verbose)

Arguments

snpQ1	the nsnp by npop matrix of Q1 estimates
snpQ2	the nsnp by (npop*(npop-1))/2 matrix of all pairwise Q2 estimates
q1_idx	the nsnp by 2 matrix with the indexes of the Q1 needed to compute each F2
snp_bj_id	integer vector of length nsnp giving the block index of each SNP
verbose	if TRUE progression bar is printed on the terminal

Details

Compute the the block-jackknife mean of F2 values

Value

Return a vector with the block-jackknife mean estimates of the F2 values

Examples

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poolfstat documentation built on Sept. 8, 2023, 5:49 p.m.