Construction and Analysis of Matrix Population Models

01Introduction | Introduction to the popbio Package |

02Caswell | Converted Matlab functions from Caswell (2001) |

03Morris | Converted Matlab functions from Morris and Doak (2002) |

aq.census | Annual census data for Aquilegia in the southwestern US |

aq.matrix | Create a projection matrix for Aquilegia |

aq.trans | Annual transition data for Aquilegia in the southwestern US |

betaval | Generate beta-distributed random numbers |

boot.transitions | Bootstrap observed census transitions |

calathea | Projection matrices for a tropical understory herb |

countCDFxt | Count-based extinction probabilities and bootstrap confidence... |

damping.ratio | Damping ratio |

eigen.analysis | Eigenvalue and eigenvector analysis of a projection matrix |

elasticity | Elasticity analysis of a projection matrix |

extCDF | Count-based extinction time cumulative distribution function |

fundamental.matrix | Fundamental matrix and age-specific survival |

generation.time | Generation time |

grizzly | Population sizes of grizzly bears in Yellowstone from... |

head2 | Return the first and last part of a matrix or dataframe |

hudcorrs | Correlation matrices for Hudsonia vital rates |

hudmxdef | Matrix definition program for Hudsonia vital rates |

hudsonia | Projection matrices for mountain golden heather |

hudvrs | Best Kendall estimates of Hudsonia vital rate means and... |

image2 | Display a matrix image |

Kendall | Find the best Kendall's estimates of mean and environmental... |

lambda | Population growth rate |

lnorms | Generate random lognormal values for fertility rates |

logi.hist.plot | Plot logistic regression |

LTRE | Life Table Response Experiment |

matplot2 | Plot a matrix |

matrix2 | Square matrices |

mean.list | Calculate mean matrix |

monkeyflower | Projection matrices for monkeyflower |

multiresultm | Incorporate demographic stochasticity into population... |

nematode | Population densities for the sugarbeet cyst nematode |

net.reproductive.rate | Net reproductive rate |

pfister.plot | Create log-log plots of variance vs. sensitivity and CV vs.... |

pop.projection | Calculate population growth rates by projection |

projection.matrix | Construct projection matrix models using transition frequency... |

QPmat | Build a projection matrix from a time series of individuals... |

reproductive.value | Stable stage distribution |

resample | Resample a projection matrix |

secder | secder |

sensitivity | Sensitivity analysis of a projection matrix |

splitA | Split a projection matrix into separate T and F matrices |

stable.stage | Stable stage distribution |

stage.vector.plot | Plot stage vector projections |

stoch.growth.rate | Calculate log stochastic growth rate |

stoch.projection | Simulate stochastic growth from a sequence of matrices |

stoch.quasi.ext | Calculate quasi-extinction threshold |

stoch.sens | stoch.sens |

stretchbetaval | Generate stretched beta-distributed random numbers |

teasel | Projection matrix for teasel |

test.census | Census data for hypothetical plant |

tortoise | Projection matrices for desert tortoise |

var2 | Calculate a variance matrix |

varEst | Estimate the variance of beta-binomial vital rates using... |

vitalsens | Vital rate sensitivities and elasticities |

vitalsim | Calculate stochastic growth rate and extinction time CDF... |

whale | Projection matrix for killer whale |

woodpecker | Survirvorship data for adult and juvenile Acorn Woodpeckers |

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