plot_filter_stats: Plot the results of filter_stats

In poppr: Genetic Analysis of Populations with Mixed Reproduction

Plot the results of filter_stats

Description

Plot the results of filter_stats

Usage

plot_filter_stats(
  x,
  fstats,
  distmat,
  cols = NULL,
  nclone = NULL,
  breaks = NULL
)

Arguments

x	a genlight of genind object
fstats	the list passed from filter_stats
distmat	a distance matrix passed from filter_stats
cols	colors to use for each algorithm (defaults to RColorBrewer set 1)
nclone	see filter_stats

Value

a plot depicting how many MLLs are collapsed as the genetic distance increases for each algorithm.

Note

This function originally appeared in \Sexpr[results=rd]{tools:::Rd_expr_doi("10.5281/zenodo.17424")}

Author(s)

Zhian N. Kamvar

References

ZN Kamvar, JC Brooks, and NJ Grünwald. 2015. Supplementary Material for Frontiers Plant Genetics and Genomics 'Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality'. DOI: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.5281/zenodo.17424")}

Kamvar ZN, Brooks JC and Grünwald NJ (2015) Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality. Front. Genet. 6:208. doi: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.3389/fgene.2015.00208")}

See Also

filter_stats

poppr documentation built on May 29, 2024, 5:54 a.m.