plot_filter_stats: Plot the results of filter_stats
In poppr: Genetic Analysis of Populations with Mixed Reproduction

Description Usage Arguments Value Note Author(s) References See Also

Plot the results of filter_stats

plot_filter_stats(
  x,
  fstats,
  distmat,
  cols = NULL,
  nclone = NULL,
  breaks = NULL
)

`x`	a genlight of genind object
`fstats`	the list passed from `filter_stats`
`distmat`	a distance matrix passed from `filter_stats`
`cols`	colors to use for each algorithm (defaults to RColorBrewer set 1)
`nclone`	see `filter_stats`

a plot depicting how many MLLs are collapsed as the genetic distance increases for each algorithm.

This function originally appeared in doi: 10.5281/zenodo.17424DOI: 10.5281/zenodo.17424

Zhian N. Kamvar

ZN Kamvar, JC Brooks, and NJ Grünwald. 2015. Supplementary Material for Frontiers Plant Genetics and Genomics 'Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality'. DOI: doi: 10.5281/zenodo.17424

Kamvar ZN, Brooks JC and Grünwald NJ (2015) Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality. Front. Genet. 6:208. doi: doi: 10.3389/fgene.2015.00208

filter_stats

poppr documentation built on Sept. 7, 2021, 9:06 a.m.