poppr.plot: Internal function to plot the results from ia() and poppr()

In poppr: Genetic Analysis of Populations with Mixed Reproduction

Internal function to plot the results from ia() and poppr()

Description

Internal function to plot the results from ia() and poppr()

Usage

poppr.plot(
  sample,
  pval = c(Ia = 0.05, rbarD = 0.05),
  pop = NULL,
  file = NULL,
  N = NULL,
  observed = c(Ia = 0, rbarD = 0),
  index = c("rbarD", "Ia"),
  labsize = rel(3),
  linesize = rel(1)
)

Arguments

sample	either an object of class "ialist" or a list of ialists
pval	a named vector specifying the p values to display
pop	The name of the population
file	The name of the source file
N	The number of samples in the population
observed	observed values of Ia and rbarD
index	The index to plot (defaults to "rbarD")
labsize	size of the in-plot label
linesize	size of the in-plot line

Value

a ggplot2 object

Examples

## Not run: 
data(Pinf)
x <- Pinf %>% seppop() %>% lapply(ia, sample = 99, valuereturn = TRUE, quiet = TRUE, plot = FALSE)
x
poppr:::poppr.plot(sample = x, file = "hey") # plots multiple populations
# plot.ialist takes care of the single populations.
for (i in x){
  print(plot(i))
}

## End(Not run)

poppr documentation built on May 29, 2024, 5:54 a.m.