snpclone-coercion-methods: Create a snpclone object from a genlight object.

In poppr: Genetic Analysis of Populations with Mixed Reproduction

Create a snpclone object from a genlight object.

Description

Wrapper for snpclone initializer.

Usage

as.snpclone(x, ..., parallel = FALSE, n.cores = NULL, mlg, mlgclass = TRUE)

Arguments

x	a genlight or snpclone object
...	arguments to be passed on to the genlight constructor. These are not used if x is not missing.
parallel	should the parallel package be used to construct the object?
n.cores	how many cores should be utilized? See documentation for genlight for details.
mlg	a vector of multilocus genotypes or an object of class MLG for the new snpclone object.
mlgclass	if TRUE (default), the multilocus genotypes will be represented as an MLG object.

Author(s)

Zhian N. Kamvar

Examples

(x <- as.snpclone(glSim(100, 1e3, ploid=2)))
## Not run: 
# Without parallel processing
system.time(x <- as.snpclone(glSim(1000, 1e5, ploid=2)))

# With parallel processing... doesn't really save you much time.
system.time(x <- as.snpclone(glSim(1000, 1e5, ploid=2, parallel = TRUE), 
                             parallel = TRUE))

## End(Not run)

poppr documentation built on May 29, 2024, 5:54 a.m.