upgma: UPGMA

Description Usage Arguments Value Author(s) See Also Examples

Description

UPGMA clustering. Just a wrapper function around hclust.

Usage

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upgma(d)

Arguments

d

A distance matrix.

Value

A phylogenetic tree of class phylo.

Author(s)

Klaus Schliep klaus.schliep@gmail.com

See Also

hclust, as.phylo

Examples

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library(ape)
data(woodmouse)
dm <- dist.dna(woodmouse)
tree <- upgma(dm)
plot(tree)

poppr documentation built on Sept. 7, 2021, 9:06 a.m.