Nothing
knitr::opts_chunk$set(echo = TRUE) # {r, results="hide"} - The chunks is run but all results are hidden. The code shows in the doc, # {r, include=FALSE} - the code is run but neither the code or the results are shown # {r, echo=FLASE} - The code is not shown, but results are # bug= colaus has some NA in newID column on 9660 with csv data but no part2summary
library(xlsx) library(knitr) currentdir="/data/guow4/project0/GGIR/postGGIR/postGGIR_compile/postGGIR3.0/inst/extdata/example/afterGGIR" studyname="Example" setwd(currentdir) foutFN<-function(x,studyname) paste("part7a_",studyname,"_some_features_page",x,".csv",sep="") outFN<-paste("part7b_",studyname,"_all_features_3.csv",sep="") outFN.anno<-paste("part7c_",studyname,"_all_features.xlsx",sep="")
r outFN.anno
).root<-c("1_features", "2_face_day_PCs", "3_face_subject_PCs", "4_denseFLMM_day_PCs", "5_denseFLMM_subject_PCs","6_all") feaFN<-system.file("template", "features.dictionary.xlsx", package = "postGGIR") system(paste("cat ",feaFN," > ",outFN.anno,sep="")) for (i in 1:6){ if (i<=5) inFN<-foutFN(root[i],studyname) else inFN<-outFN d<-read.csv(inFN, header = TRUE,stringsAsFactors=F) print(paste( c(i,inFN,dim(d)),collapse=" ")) try(write.xlsx(d, file=outFN.anno, sheetName = root[i], col.names = TRUE, row.names = FALSE,append=TRUE)) }
How to run this?
cd /data/guow4/project0/GGIR/postGGIR/postGGIR_compile/postGGIR3.0/inst/extdata/example/afterGGIR
R -e "rmarkdown::render('part7c_Example_postGGIR_JIVE_3_excelReport.Rmd' )"
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