prevalence: Tools for Prevalence Assessment Studies
Version 0.4.0

The prevalence package provides Frequentist and Bayesian methods for prevalence assessment studies. IMPORTANT: the truePrev functions in the prevalence package call on JAGS (Just Another Gibbs Sampler), which therefore has to be available on the user's system. JAGS can be downloaded from http://mcmc-jags.sourceforge.net/.

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AuthorBrecht Devleesschauwer [aut, cre], Paul Torgerson [aut], Johannes Charlier [aut], Bruno Levecke [aut], Nicolas Praet [aut], Sophie Roelandt [aut], Suzanne Smit [aut], Pierre Dorny [aut], Dirk Berkvens [aut], Niko Speybroeck [aut]
Date of publication2015-04-20 18:30:21
MaintainerBrecht Devleesschauwer <brechtdv@gmail.com>
LicenseGPL (>= 2)
Version0.4.0
URL http://prevalence.cbra.be/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("prevalence")

Man pages

betaExpert: Calculate the parameters of a Beta distribution based on...
betaPERT: Calculate the parameters of a Beta-PERT distribution
convert-methods: Methods for Function 'as.matrix' in Package 'prevalence'
define: Definition of 'truePrevMulti' and 'truePrevMulti2' model
plot-methods: Methods for Function 'plot' in Package 'prevalence'
plot-methods-coda: Plotting functions from package 'coda'
prevalence-package: Tools for prevalence assessment studies
prev-class: Class '"prev"'
print-methods: Methods for Function 'print' in Package 'prevalence'
propCI: Calculate confidence intervals for prevalences and other...
show-methods: Methods for Function 'show' in Package 'prevalence'
summary-methods: Methods for Function 'summary' in Package 'prevalence'
truePrev: Estimate true prevalence from individuals samples
truePrevMulti: Estimate true prevalence from individuals samples using...
truePrevMulti2: Estimate true prevalence from individuals samples using...
truePrevPools: Estimate true prevalence from pooled samples

Functions

R2JAGS Source code
as.matrix,prev-method Man page
as.matrix-methods Man page
autocorr.plot,prev-method Man page
autocorr.plot-methods Man page
betaExpert Man page Source code
betaPERT Man page Source code
checkBinPrior Source code
checkInput Source code
checkMultiPrior_conditional Source code
checkMultiPrior_covariance Source code
checkSeSp Source code
ciLevel Source code
convert-methods Man page
cov_depth Source code
define_prior Man page Source code
define_prior2 Man page Source code
define_x Man page Source code
densplot,prev-method Man page
densplot-methods Man page
dist2list Source code
explode Source code
explode_dist Source code
explode_nodes Source code
explode_operator Source code
explode_theta Source code
gelman.plot,prev-method Man page
gelman.plot-methods Man page
get_nodes Source code
multiModel_SeSp Source code
multiModel_build Source code
multiModel_collapse Source code
multiModel_probs Source code
multiModel_select Source code
plot,prev,ANY-method Man page
plot,prev-method Man page
plot-methods Man page
plot-methods-coda Man page
plot.betaExpert Man page Source code
plot.betaPERT Man page Source code
prev-class Man page
prevalence Man page
prevalence-package Man page
print,prev-method Man page
print-methods Man page
print.betaExpert Man page Source code
print.betaPERT Man page Source code
print.prevModel Source code
propCI Man page Source code
propCI_agresticoull Source code
propCI_exact Source code
propCI_jeffreys Source code
propCI_wald Source code
propCI_wilson Source code
show,prev-method Man page
show-methods Man page
summary,prev-method Man page
summary-methods Man page
traceplot,prev-method Man page
traceplot-methods Man page
truePrev Man page Source code
truePrevBinom Source code
truePrevMulti Man page Source code
truePrevMulti2 Man page Source code
truePrevMultinom_conditional Source code
truePrevMultinom_covariance Source code
truePrevPools Man page Source code
wrap Source code
writeSeSp Source code
write_bayesP Source code
write_bayesP0 Source code
write_constraint Source code

Files

inst
inst/CITATION
NAMESPACE
NEWS
R
R/propCI_agresticoull.R
R/propCI.R
R/R2JAGS.R
R/truePrevPools.R
R/truePrev.R
R/checkSeSp.R
R/dist2list.R
R/define-functions.R
R/truePrevBinom.R
R/ciLevel.R
R/betaExpert.R
R/plot-methods.R
R/checkInput.R
R/betaPERT.R
R/print-methods.R
R/propCI_wilson.R
R/truePrevMulti-helper.R
R/wrap.R
R/truePrevMulti-main.R
R/propCI_jeffreys.R
R/plot-methods-coda.R
R/writeSeSp.R
R/propCI_wald.R
R/propCI_exact.R
R/zzz.R
R/checkBinPrior.R
MD5
DESCRIPTION
man
man/summary-methods.Rd
man/betaPERT.Rd
man/plot-methods.Rd
man/truePrevPools.Rd
man/propCI.Rd
man/prev-class.Rd
man/prevalence-package.Rd
man/truePrev.Rd
man/print-methods.Rd
man/plot-methods-coda.Rd
man/betaExpert.Rd
man/truePrevMulti.Rd
man/truePrevMulti2.Rd
man/define.Rd
man/convert-methods.Rd
man/show-methods.Rd
prevalence documentation built on May 19, 2017, 9:38 a.m.