prevalence: Tools for Prevalence Assessment Studies

The prevalence package provides Frequentist and Bayesian methods for prevalence assessment studies. IMPORTANT: the truePrev functions in the prevalence package call on JAGS (Just Another Gibbs Sampler), which therefore has to be available on the user's system. JAGS can be downloaded from http://mcmc-jags.sourceforge.net/.

Author
Brecht Devleesschauwer [aut, cre], Paul Torgerson [aut], Johannes Charlier [aut], Bruno Levecke [aut], Nicolas Praet [aut], Sophie Roelandt [aut], Suzanne Smit [aut], Pierre Dorny [aut], Dirk Berkvens [aut], Niko Speybroeck [aut]
Date of publication
2015-04-20 18:30:21
Maintainer
Brecht Devleesschauwer <brechtdv@gmail.com>
License
GPL (>= 2)
Version
0.4.0
URLs

View on CRAN

Man pages

betaExpert
Calculate the parameters of a Beta distribution based on...
betaPERT
Calculate the parameters of a Beta-PERT distribution
convert-methods
Methods for Function 'as.matrix' in Package 'prevalence'
define
Definition of 'truePrevMulti' and 'truePrevMulti2' model
plot-methods
Methods for Function 'plot' in Package 'prevalence'
plot-methods-coda
Plotting functions from package 'coda'
prevalence-package
Tools for prevalence assessment studies
prev-class
Class '"prev"'
print-methods
Methods for Function 'print' in Package 'prevalence'
propCI
Calculate confidence intervals for prevalences and other...
show-methods
Methods for Function 'show' in Package 'prevalence'
summary-methods
Methods for Function 'summary' in Package 'prevalence'
truePrev
Estimate true prevalence from individuals samples
truePrevMulti
Estimate true prevalence from individuals samples using...
truePrevMulti2
Estimate true prevalence from individuals samples using...
truePrevPools
Estimate true prevalence from pooled samples

Files in this package

prevalence
prevalence/inst
prevalence/inst/CITATION
prevalence/NAMESPACE
prevalence/NEWS
prevalence/R
prevalence/R/propCI_agresticoull.R
prevalence/R/propCI.R
prevalence/R/R2JAGS.R
prevalence/R/truePrevPools.R
prevalence/R/truePrev.R
prevalence/R/checkSeSp.R
prevalence/R/dist2list.R
prevalence/R/define-functions.R
prevalence/R/truePrevBinom.R
prevalence/R/ciLevel.R
prevalence/R/betaExpert.R
prevalence/R/plot-methods.R
prevalence/R/checkInput.R
prevalence/R/betaPERT.R
prevalence/R/print-methods.R
prevalence/R/propCI_wilson.R
prevalence/R/truePrevMulti-helper.R
prevalence/R/wrap.R
prevalence/R/truePrevMulti-main.R
prevalence/R/propCI_jeffreys.R
prevalence/R/plot-methods-coda.R
prevalence/R/writeSeSp.R
prevalence/R/propCI_wald.R
prevalence/R/propCI_exact.R
prevalence/R/zzz.R
prevalence/R/checkBinPrior.R
prevalence/MD5
prevalence/DESCRIPTION
prevalence/man
prevalence/man/summary-methods.Rd
prevalence/man/betaPERT.Rd
prevalence/man/plot-methods.Rd
prevalence/man/truePrevPools.Rd
prevalence/man/propCI.Rd
prevalence/man/prev-class.Rd
prevalence/man/prevalence-package.Rd
prevalence/man/truePrev.Rd
prevalence/man/print-methods.Rd
prevalence/man/plot-methods-coda.Rd
prevalence/man/betaExpert.Rd
prevalence/man/truePrevMulti.Rd
prevalence/man/truePrevMulti2.Rd
prevalence/man/define.Rd
prevalence/man/convert-methods.Rd
prevalence/man/show-methods.Rd