clustalo: Multiple sequence alignment with clustal omega
In primerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
clustalo R Documentation
Multiple sequence alignment with clustal omega
Description
Calls clustal omega to align a set of sequences of class DNAbin. Run
without any arguments to see all the options you can pass to the command
line clustal omega.
Usage
clustalo(x, exec = "clustalo", quiet = TRUE, original.ordering = TRUE, ...)
Arguments
x
an object of class 'DNAbin'
exec
a character string with the name or path to the program
quiet
whether to supress output to stderr or stdout
original.ordering
use the original ordering of the sequences
...
additional arguments passed to the command line clustalo
primerTree documentation built on April 5, 2022, 5:07 p.m.
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| clustalo | R Documentation |
Multiple sequence alignment with clustal omega
Description
Calls clustal omega to align a set of sequences of class DNAbin. Run without any arguments to see all the options you can pass to the command line clustal omega.
Usage
clustalo(x, exec = "clustalo", quiet = TRUE, original.ordering = TRUE, ...)
Arguments
x |
an object of class 'DNAbin' |
exec |
a character string with the name or path to the program |
quiet |
whether to supress output to stderr or stdout |
original.ordering |
use the original ordering of the sequences |
... |
additional arguments passed to the command line clustalo |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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