plot_tree: plots a tree, optionally with colored and labeled points by...

In primerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs

plots a tree, optionally with colored and labeled points by taxonomic rank

Description

plots a tree, optionally with colored and labeled points by taxonomic rank

Usage

plot_tree(
  tree,
  type = "unrooted",
  main = NULL,
  guide_size = NULL,
  rank = NULL,
  taxonomy = NULL,
  size = 2,
  legend_cutoff = 25,
  ...
)

Arguments

tree	to be plotted, use layout_tree to layout tree.
type	The type of tree to plot, default unrooted.
main	An optional title for the plot
guide_size	The size of the length guide. If NULL auto detects a reasonable size.
rank	The rank to include, if null only the tree is plotted
taxonomy	A data.frame with an accession field corresponding to the tree tip labels.
size	The size of the colored points
legend_cutoff	The number of different taxa names after which the names are no longer printed.
...	additional arguments passed to layout_tree_ape

Value

plot to be printed.

primerTree documentation built on April 5, 2022, 5:07 p.m.