filter_seqs: Filter out sequences retrieved by search_primer_pair() that...

In primerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs

Filter out sequences retrieved by search_primer_pair() that are either too short or too long. The alignment and tree will be recalculated after removing unwanted reads.

Description

Filter out sequences retrieved by search_primer_pair() that are either too short or too long. The alignment and tree will be recalculated after removing unwanted reads.

Usage

filter_seqs(x, ...)

## S3 method for class 'primerTree'
filter_seqs(x, min_length = 0, max_length = Inf, ...)

Arguments

x	a primerTree object
...	additional arguments passed to methods.
min_length	the minimum sequence length to keep
max_length	the maximum sequence length to keep

Value

a primerTree object

Methods (by class)

• primerTree: Method for primerTree objects

Examples

## Not run: 
# filter out sequences longer or shorter than desired:
mammals_16S_filtered <- filter_seqs(mammals_16S, min_length=131, max_length=156)

## End(Not run)

primerTree documentation built on April 5, 2022, 5:07 p.m.