seq_lengths: Get a summary of sequence lengths from a primerTree object

In primerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs

Get a summary of sequence lengths from a primerTree object

Description

Get a summary of sequence lengths from a primerTree object

Usage

seq_lengths(x, summarize = TRUE)

Arguments

x	a primerTree object.
summarize	a logical indicating if a summary should be displayed

Value

a table of sequence length frequencies

Examples

# Show the counts for each length
seq_lengths(mammals_16S)

# Plot the distribution of lengths
seqLengths <- seq_lengths(mammals_16S)
barplot(seqLengths,
 main = "Frequency of sequence lengths for 16S mammal primers",
 xlab="Amplicon length (in bp)",
 ylab=("Frequency"))

primerTree documentation built on Nov. 5, 2025, 6:22 p.m.