tree_from_alignment: Construct a neighbor joining tree from a dna alignment

Description Usage Arguments See Also

View source: R/sequence.R

Description

Construct a neighbor joining tree from a dna alignment

Usage

1
tree_from_alignment(dna, pairwise.deletion = TRUE, ...)

Arguments

dna

fasta dna object the tree is to be constructed from

pairwise.deletion

a logical indicating if the distance matrix should be constructed using pairwise deletion

...

furthur arguments to dist.dna

See Also

dist.dna, nj


primerTree documentation built on May 30, 2017, 4:15 a.m.