tree_from_alignment: Construct a neighbor joining tree from a dna alignment

In primerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs

Construct a neighbor joining tree from a dna alignment

Description

Construct a neighbor joining tree from a dna alignment

Usage

tree_from_alignment(dna, pairwise.deletion = TRUE, ...)

Arguments

dna	fasta dna object the tree is to be constructed from
pairwise.deletion	a logical indicating if the distance matrix should be constructed using pairwise deletion
...	furthur arguments to dist.dna

See Also

dist.dna, nj

primerTree documentation built on April 5, 2022, 5:07 p.m.