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protti: Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools
Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.
Package details |
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| Author | Jan-Philipp Quast [aut, cre] (<https://orcid.org/0000-0003-2713-778X>), Dina Schuster [aut] (<https://orcid.org/0000-0001-6611-8237>), ETH Zurich [cph, fnd] |
| Maintainer | Jan-Philipp Quast <quast@imsb.biol.ethz.ch> |
| License | MIT + file LICENSE |
| Version | 0.9.1 |
| URL | https://github.com/jpquast/protti https://jpquast.github.io/protti/ |
| Package repository | View on CRAN |
| Installation |
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