protti: Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.

Package details

AuthorJan-Philipp Quast [aut, cre], Dina Schuster [aut], ETH Zurich [cph, fnd]
MaintainerJan-Philipp Quast <quast@imsb.biol.ethz.ch>
LicenseMIT + file LICENSE
Version0.2.0
URL https://github.com/jpquast/protti https://jpquast.github.io/protti/
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("protti")

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protti documentation built on Sept. 17, 2021, 5:12 p.m.