fetch_pdb: Fetch structure information from RCSB

Description Usage Arguments Value Examples

View source: R/fetch_pdb.R

Description

Fetches structure metadata from RCSB. If you want to retrieve atom data such as positions, use the function fetch_pdb_structure().

Usage

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fetch_pdb(pdb_ids, batchsize = 200, show_progress = TRUE)

Arguments

pdb_ids

a character vector of PDB identifiers.

batchsize

a numeric value that specifies the number of structures to be processed in a single query. Default is 2000.

show_progress

a logical value that indicates if a progress bar will be shown. Default is TRUE.

Value

A data frame that contains structure metadata for the PDB IDs provided. The data frame contains some columns that might not be self explanatory.

Examples

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pdb <- fetch_pdb(pdb_ids = c("6HG1", "1E9I", "6D3Q", "4JHW"))

head(pdb)

protti documentation built on Sept. 17, 2021, 5:12 p.m.