fetch_kegg: Fetch KEGG pathway data from KEGG
In protti: Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools
fetch_kegg R Documentation
Fetch KEGG pathway data from KEGG
Description
Fetches gene IDs and corresponding pathway IDs and names for the provided organism.
Usage
fetch_kegg(species)
Arguments
species
a character value providing an abreviated species name. "hsa" for human, "eco"
for E. coli and "sce" for S. cerevisiae. Additional possible names can be found for
eukaryotes and for
prokaryotes.
Value
A data frame that contains gene IDs with corresponding pathway IDs and names for a
selected organism.
Examples
kegg <- fetch_kegg(species = "hsa")
head(kegg)
protti documentation built on Jan. 22, 2023, 1:11 a.m.
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| fetch_kegg | R Documentation |
Fetch KEGG pathway data from KEGG
Description
Fetches gene IDs and corresponding pathway IDs and names for the provided organism.
Usage
fetch_kegg(species)
Arguments
species |
a character value providing an abreviated species name. "hsa" for human, "eco" for E. coli and "sce" for S. cerevisiae. Additional possible names can be found for eukaryotes and for prokaryotes. |
Value
A data frame that contains gene IDs with corresponding pathway IDs and names for a selected organism.
Examples
kegg <- fetch_kegg(species = "hsa") head(kegg)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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