fetch_go: Fetch gene ontology information from geneontology.org
In protti: Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools
fetch_go R Documentation
Fetch gene ontology information from geneontology.org
Description
Fetches gene ontology data from geneontology.org for the provided organism ID.
Usage
fetch_go(organism_id)
Arguments
organism_id
a character value NCBI taxonomy identifier of an organism (TaxId).
Possible inputs inlude only: "9606" (Human), "559292" (Yeast) and "83333" (E. coli).
Value
A data frame that contains gene ontology mappings to UniProt or SGD IDs. The original
file is a .GAF file. A detailed description of all columns can be found here:
http://geneontology.org/docs/go-annotation-file-gaf-format-2.1/
Examples
go <- fetch_go("9606")
head(go)
protti documentation built on Jan. 22, 2023, 1:11 a.m.
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| fetch_go | R Documentation |
Fetch gene ontology information from geneontology.org
Description
Fetches gene ontology data from geneontology.org for the provided organism ID.
Usage
fetch_go(organism_id)
Arguments
organism_id |
a character value NCBI taxonomy identifier of an organism (TaxId). Possible inputs inlude only: "9606" (Human), "559292" (Yeast) and "83333" (E. coli). |
Value
A data frame that contains gene ontology mappings to UniProt or SGD IDs. The original file is a .GAF file. A detailed description of all columns can be found here: http://geneontology.org/docs/go-annotation-file-gaf-format-2.1/
Examples
go <- fetch_go("9606")
head(go)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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