API for protti
Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools
| Global functions | |
|---|---|
| .onAttach | Source code |
| analyse_functional_network | Man page Source code |
| anova_protti | Man page Source code |
| assign_missingness | Man page Source code |
| assign_peptide_type | Man page Source code |
| barcode_plot | Man page Source code |
| calculate_aa_scores | Man page Source code |
| calculate_diff_abundance | Man page Source code |
| calculate_go_enrichment | Man page Source code |
| calculate_imputation | Man page Source code |
| calculate_kegg_enrichment | Man page Source code |
| calculate_protein_abundance | Man page Source code |
| calculate_sequence_coverage | Man page Source code |
| calculate_treatment_enrichment | Man page Source code |
| create_queue | Man page Source code |
| create_structure_contact_map | Man page Source code |
| create_synthetic_data | Man page Source code |
| diff_abundance | Man page Source code |
| drc_4p | Man page Source code |
| drc_4p_plot | Man page Source code |
| extract_metal_binders | Man page Source code |
| fetch_alphafold_aligned_error | Man page Source code |
| fetch_alphafold_prediction | Man page Source code |
| fetch_chebi | Man page Source code |
| fetch_eco | Man page Source code |
| fetch_go | Man page Source code |
| fetch_kegg | Man page Source code |
| fetch_metal_pdb | Man page Source code |
| fetch_mobidb | Man page Source code |
| fetch_pdb | Man page Source code |
| fetch_pdb_structure | Man page Source code |
| fetch_quickgo | Man page Source code |
| fetch_uniprot | Man page Source code |
| fetch_uniprot_proteome | Man page Source code |
| filter_cv | Man page Source code |
| find_all_subs | Man page Source code |
| find_chebis | Man page Source code |
| find_peptide | Man page Source code |
| find_peptide_in_structure | Man page Source code |
| fit_drc_4p | Man page Source code |
| go_enrichment | Man page Source code |
| impute | Man page Source code |
| kegg_enrichment | Man page Source code |
| map_peptides_on_structure | Man page Source code |
| median_normalisation | Man page Source code |
| metal_chebi_uniprot | Man page |
| metal_go_slim_subset | Man page |
| metal_list | Man page |
| network_analysis | Man page Source code |
| normalise | Man page Source code |
| parallel_create_structure_contact_map | Man page Source code |
| parallel_fit_drc_4p | Man page Source code |
| peptide_profile_plot | Man page Source code |
| peptide_type | Man page Source code |
| plot_drc_4p | Man page Source code |
| plot_peptide_profiles | Man page Source code |
| plot_pval_distribution | Man page Source code |
| predict_alphafold_domain | Man page Source code |
| protti_colours | Man page |
| ptsi_pgk | Man page |
| pval_distribution_plot | Man page Source code |
| qc_charge_states | Man page Source code |
| qc_contaminants | Man page Source code |
| qc_cvs | Man page Source code |
| qc_data_completeness | Man page Source code |
| qc_ids | Man page Source code |
| qc_intensity_distribution | Man page Source code |
| qc_median_intensities | Man page Source code |
| qc_missed_cleavages | Man page Source code |
| qc_pca | Man page Source code |
| qc_peak_width | Man page Source code |
| qc_peptide_type | Man page Source code |
| qc_proteome_coverage | Man page Source code |
| qc_ranked_intensities | Man page Source code |
| qc_sample_correlation | Man page Source code |
| qc_sequence_coverage | Man page Source code |
| randomise_queue | Man page Source code |
| rapamycin_10uM | Man page |
| rapamycin_dose_response | Man page |
| read_protti | Man page Source code |
| replace_identified_by_x | Man page Source code |
| scale_protti | Man page Source code |
| sequence_coverage | Man page Source code |
| split_metal_name | Man page Source code |
| treatment_enrichment | Man page Source code |
| try_query | Man page Source code |
| ttest_protti | Man page Source code |
| viridis_colours | Man page |
| volcano_plot | Man page Source code |
| volcano_protti | Man page Source code |
| woods_plot | Man page Source code |
