View source: R/qc_data_completeness.R
qc_data_completeness | R Documentation |
Calculates the percentage of data completeness. That means, what percentage of all detected precursors is present in each sample.
qc_data_completeness( data, sample, grouping, intensity, digestion = NULL, plot = TRUE, interactive = FALSE )
data |
a data frame containing at least the input variables. |
sample |
a character column in the |
grouping |
a character column in the |
intensity |
a numeric column in the |
digestion |
optional, a character column in the |
plot |
a logical value that indicates whether the result should be plotted. |
interactive |
a logical value that specifies whether the plot should be interactive (default is FALSE). |
A bar plot that displays the percentage of data completeness over all samples.
If plot = FALSE
a data frame is returned. If interactive = TRUE
, the plot is
interactive.
set.seed(123) # Makes example reproducible # Create example data data <- create_synthetic_data( n_proteins = 100, frac_change = 0.05, n_replicates = 3, n_conditions = 2, method = "effect_random" ) # Determine data completeness qc_data_completeness( data = data, sample = sample, grouping = peptide, intensity = peptide_intensity_missing, plot = FALSE ) # Plot data completeness qc_data_completeness( data = data, sample = sample, grouping = peptide, intensity = peptide_intensity_missing, plot = TRUE )
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.