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#' @title Export ptables as a txt-file
#'
#' @description Function to export perturbation table to Tau-Argus, SAS or
#' any other CKM tool (as txt-file).
#'
#' @param ... 1 or 2 input object of class \code{\linkS4class{ptable}}
#' @param file (character) filename (only 'txt' is possible as file extension)
#' @param SDCtool (character) either "TauArgus" or "SAS"
#'
#' @author Tobias Enderle
#' @keywords export
#'
#' @return Returns `NULL` and the ptable is saved in the specified format.
#'
#' @examples
#' \donttest{
#' ptab <- create_cnt_ptable(D = 5, V = 3, js = 2, label = "test")
#' pt_export(ptab, file = tempfile("ptable_example"), SDCtool = "TauArgus")
#' }
#' @rdname pt_export
#' @export
#'
pt_export <- function(..., file, SDCtool="TauArgus"){
if (!is.null(file)) {
stopifnot(is_scalar_character(file))
}
if (grepl("\\.", file)) {
if (file_ext(tolower(file)) != "txt")
stop("Only the file extension '.txt' can be specified.")
filename <- file
} else {
filename <- paste0(file, ".txt")
}
stopifnot(SDCtool %in% c("TauArgus","SAS"))
inp.names <- names(list(...))
inp <- list(...)
#input <- eval(substitute(alist(...)))
nr <- length(inp)
message(inp.names)
if( !(nr %in% c(1,2)) )
stop(paste("At least 1 but no more than 2 input objects \n"))
for (i in 1:nr){
stopifnot(isS4(inp[[i]]))
stopifnot(class(inp[[i]])=="ptable")
}
# Input Object 1
params1 <- slot(inp[[1]], "pParams")
table1 <- slot(params1, "table")
type1 <- slot(params1, "type")
if (table1=="cnts" & nr==2)
stop(paste0("You have specified a frequency table (table='cnts'). ",
"So you need only 1 input object. That must be of type='all'."))
# if only 1 object is set
if (table1=="nums" & nr==1){
query <- type1 == "all"
if ( !(query) )
stop(paste0("You have specified a magnitude table (table='nums') and ",
"set the argument type='",type1,"'. However, you need ",
"either 1 input object of type='all' OR you need 2 input ",
"objects: the first with type='even' and the second with ",
"type='odd'."))
}
if (table1=="cnts"){
if (SDCtool=="TauArgus"){
pTable <- slot(inp[[1]], "pTable")[,c('i','j','p','v','p_int_ub'),]
message("\n NOTE: If you have modified the ptable using ",
"'modify_cnt_ptable()': ",
"Please use a new Tau-Argus Release (>= 4.2.3).")
}
if (SDCtool=="SAS")
pTable <-
slot(inp[[1]], "pTable")[, c('i', 'j', 'p', 'v',
'p_int_lb', 'p_int_ub'), ]
}
if (table1=="nums" & nr==2){
params2 <- slot(inp[[2]], "pParams")
table2 <- slot(params2, "table")
type2 <- slot(params2, "type")
query <- c("odd","even") %in% c(type1, type2)
if ( !(all(query)) )
stop(paste0("You have specified the types '",type1,"' and '",type2,
"'. However, you need 'type=even' and also 'type=odd'."))
pTable <- rbind(slot(inp[[1]], "pTable"),
slot(inp[[2]], "pTable"))
pTable <- pTable[,c('i','j','p','v','p_int_ub','type'),]
}
if (table1=="nums" & nr==1){
if (SDCtool=="TauArgus")
pTable <- slot(inp[[1]], "pTable")[,c('i','j','p','v','p_int_ub','type'),]
if (SDCtool=="SAS")
pTable <- slot(inp[[1]], "pTable")[, c('i', 'j', 'p', 'v',
'p_int_lb', 'p_int_ub', 'type'), ]
}
write.table(format(pTable, digits=8), file=filename, sep=";",
dec=".", row.names = FALSE, col.names = TRUE, quote=FALSE)
#return(pTable)
}
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