basic_summaries: Basic summaries of a cross2 object

basic_summariesR Documentation

Basic summaries of a cross2 object

Description

Basic summaries of a cross2 object.

Usage

n_ind(cross2)

n_ind_geno(cross2)

n_ind_pheno(cross2)

n_ind_covar(cross2)

n_ind_gnp(cross2)

ind_ids(cross2)

ind_ids_geno(cross2)

ind_ids_pheno(cross2)

ind_ids_covar(cross2)

ind_ids_gnp(cross2)

n_chr(cross2)

n_founders(cross2)

founders(cross2)

chr_names(cross2)

tot_mar(cross2)

n_mar(cross2)

marker_names(cross2)

n_pheno(cross2)

pheno_names(cross2)

n_covar(cross2)

covar_names(cross2)

n_phenocovar(cross2)

phenocovar_names(cross2)

Arguments

cross2

An object of class "cross2", as output by read_cross2(). For details, see the R/qtl2 developer guide.

Value

Variously a number, vector of numbers, or vector of character strings.

Functions

  • n_ind(): Number of individuals (either genotyped or phenotyped)

  • n_ind_geno(): Number of genotyped individuals

  • n_ind_pheno(): Number of phenotyped individuals

  • n_ind_covar(): Number of individuals with covariate data

  • n_ind_gnp(): Number of individuals with both genotype and phenotype data

  • ind_ids(): IDs of individuals (either genotyped or phenotyped)

  • ind_ids_geno(): IDs of genotyped individuals

  • ind_ids_pheno(): IDs of phenotyped individuals

  • ind_ids_covar(): IDs of individuals with covariate data

  • ind_ids_gnp(): IDs of individuals with both genotype and phenotype data

  • n_chr(): Number of chromosomes

  • n_founders(): Number of founder strains

  • founders(): Names of founder strains

  • chr_names(): Chromosome names

  • tot_mar(): Total number of markers

  • n_mar(): Number of markers on each chromosome

  • marker_names(): Marker names

  • n_pheno(): Number of phenotypes

  • pheno_names(): Phenotype names

  • n_covar(): Number of covariates

  • covar_names(): Covariate names

  • n_phenocovar(): Number of phenotype covariates

  • phenocovar_names(): Phenotype covariate names

See Also

summary.cross2()


qtl2 documentation built on May 29, 2024, 11:46 a.m.