clean_scan1: Clean scan1 output

In qtl2: Quantitative Trait Locus Mapping in Experimental Crosses

Clean scan1 output

Description

Clean scan1 output by replacing negative values with NA and remove rows where all values are NA.

Usage

clean_scan1(object, ...)

## S3 method for class 'scan1'
clean(object, ...)

Arguments

object	Output of scan1().
...	Ignored at present

Value

The input object with negative values replaced with NAs and then rows with all NAs removed.

Examples

iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2"))

pr <- calc_genoprob(iron)
out <- scan1(pr, iron$pheno)

out <- clean(out)

qtl2 documentation built on May 29, 2024, 11:46 a.m.