ADtable: Allele Depth (AD) example data

In rCNV: Detect Copy Number Variants from SNPs Data

Allele Depth (AD) example data

Description

Example SNPs data of Chinook Salmon from Larson et al. et al. 2014. The data contains only a partial snps data set of RadSeq data after filtering.

Usage

data(ADtable)

Format

An object of class data.frame with 3000 rows and 109 columns.

References

• Larson, W. A., Seeb, L. W., Everett, M. V., Waples, R. K., Templin, W. D., & Seeb, J. E. (2014). Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha). Evolutionary Applications, 7(3), 355-369.

• McKinney, G. J., Waples, R. K., Seeb, L. W., & Seeb, J. E. (2017). Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping by sequencing data from natural populations. Molecular Ecology Resources, 17(4)

rCNV documentation built on Sept. 30, 2024, 9:39 a.m.