alleleINF: Allele info example data

In rCNV: Detect Copy Number Variants from SNPs Data

Allele info example data

Description

Semi-randomly generated data from the function dup.snp.info. Data contains depth and proportion values of 2857 snps

Usage

data(alleleINF)

Format

An object of class data.frame with 2857 rows and 28 columns.

Source

Chinook Salmon sequence reads McKinney et al. 2017

References

• Larson, W. A., Seeb, L. W., Everett, M. V., Waples, R. K., Templin, W. D., & Seeb, J. E. (2014). Genotyping by sequencing resolves #' shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha). Evolutionary Applications, 7(3)

• McKinney, G. J., Waples, R. K., Seeb, L. W., & Seeb, J. E. (2017). Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping by sequencing data from natural populations. Molecular Ecology Resources, 17(4)

Examples

data(alleleINF)
with(alleleINF,plot(medRatio~propHet))

rCNV documentation built on Sept. 30, 2024, 9:39 a.m.